rs45670246 SNP Detail

Summary

• ID
  rs45670246
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGCCCA GTCTTCTTGG
  CTCAGAGCAA CCAAGCCCCG CCCCCCATGC TCGGCGCAAT CAAGTCCCTC CTTCGTGAAG
  GCTCAGTGCG CCGGCGCAGA GCCGAAAAGT GAGGCGGCCG GCCGGCGCCG CACTACGCAT
  GCGCGGGCCT TGGCGGCGGG ACTTTTTGGC TGGTTTGGCG GGTTGCTGAT ATGTGTCTAA
  M
  GTTCTCATTG GATGTGGCTG AGCCTGGCGG CGTTTGCCAG AGTACGGTTT TGTGGTGTGG
  TCTTAGAGAG TTAGTCCCAC CTCTTCAATC TAAGCAGTGG GGTGGCGGGA CAGGGGTGGT
  TTCAATCAGC ACCCGTGCCC TTGCCAGCCC AGGGTTGGTT ACCCTTGGTG GAACAGGCCA
  CCCAGACAGG GCTGGACCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148343942	ENSMUSSNP4124404	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320627898	CHEV_2_174298752	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45670246					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	310 bp upstream
Rr397557	regulatory region 397557	73 bp downstream
Rr572132	regulatory region 572132	1935 bp distal
Rr572133	regulatory region 572133	364 bp distal
Rr572134	regulatory region 572134	628 bp distal
Rr572135	regulatory region 572135	261 bp distal
Rr572136	regulatory region 572136	233 bp distal
Rr572137	regulatory region 572137	56 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	315 bp upstream
Tssr28036	transcription start site region 28036	232 bp upstream