rs45670927 SNP Detail

Summary

• ID
  rs45670927
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39303941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCAATCC CCCTAGTCTT
  GGAGAATAAT TCTATATTGA GTAGCCCAAA TATTTAGAGT TTATTTCACA TATGGTGTGT
  GCGACCCATA AGACATTATT ACCTCTTTAA AATGCCTTAA GTCTGTCTTT TCTACAGAAA
  GCAATTCTAT TTTATCATAA CCTTGTGGAT GATCTGCATT AGCAGGCACA TGCTTTATAA
  M
  TACCGGGAAT GCTATTGGTG ATTCTGTTAC ACAAAACTGC TGTGGGTCTC TTCTGACCAT
  TCTCCTGCTT TTTCATTTCT TTGACTAGAG TGACATTTTG TTTTGATAAA ATATCCTTTA
  CAATATAATA AGACAGATAC AAGAAGCATT TAATCCTCAT TTTCAGAAAC AAATTAACAA
  AATAACTATT TTTGTTATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312159	NES15803725	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45670927					SNP	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312159	NES15803725	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39303941 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	9 bp downstream
Tssr156338	transcription start site region 156338	17 bp upstream
Tssr156339	transcription start site region 156339	42 bp upstream
Tssr156340	transcription start site region 156340	142 bp upstream
Tssr156341	transcription start site region 156341	191 bp upstream