rs45671663 SNP Detail

Summary

• ID
  rs45671663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61316158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATTGAAA CATCAGTCTT
  ATTTTTTTCT CACTCCTACG CCTGTCCTTA AGCATGTTGT CAGTATATTA CTCCATAATA
  CATGAAAAGA TAAATAGAAA ATTTCAGGAG GATTAGCAGG CACACATTGG GCAGATTAGA
  AAAGAAAATG GATTTTTAGA CATGGAAAAG AGTTTGTTAT AAGACATAAG AAAGCAAGTA
  Y
  ATTCAATGTT GTTGTACCTG AAACTCACAG TACAAAATAA GATTCAAGAA GAATAGGAAC
  AGAAAAAAAT AGAAATGATA TTTCTTTCAT CATAGCCTGC GTGTGTGTGT GTGCGCGCAC
  ACACACACAC ACACACACAC ACACCACACA CTTGCACACA ACCTTGTGCC TTGAGGAAAA
  GGGTGAAGGA AATGAATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135224514	ENSMUSSNP2325858	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45671663					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61316158 () rs orientation: forward

Symbol	Name	Function Class
Gm40061	predicted gene, 40061	within coordinates
Rr72571	regulatory region 72571	958 bp distal
Rr81199	regulatory region 81199	within coordinates
Tssr888	transcription start site region 888	1181 bp upstream