rs45672177 SNP Detail

Summary

• ID
  rs45672177
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCATCG GGCACCAGGA
  CACCCCAGTG TATCCTCAAG GCCGCCTTTG CTTGGATCCA TGAAGAAATT CCCAACTGCT
  GTGGCTGAAG TCTAAGGTCT GCTCATGTCT AGCCCCTGAG CTGTCTATCA GCCTGACCAT
  GGCTTCAGTA GGAGGGCTCT GCTGTGTGTG ACAGTTAGAA CACTAATATG TCTCCAAATT
  T
  TGGCTCCCCA AAGGGACAAC TGGGAGAATC TTGGGTCCTG GAGTCCATGC TCTGGTCTGC
  AATAACCTCC TTTTTTTTCA TGTGGCCTGG TACTGCTTGC CCTGTAGTTT CCAAGAGACA
  GATGAGCTAA CACGTAAAAC ATAAAAAGAG TGTGCTGCAC AGATGTTGGG TGGTTTGCTT
  GTGGCCAGTC AGTTCCTCAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145548330	ENSMUSSNP399996	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45672177					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777409 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1809 bp distal
Rr12645	regulatory region 12645	992 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1931 bp downstream
Tssr226	transcription start site region 226	1661 bp upstream
Tssr227	transcription start site region 227	226 bp upstream
Tssr9015	transcription start site region 9015	1935 bp downstream
Tssr9016	transcription start site region 9016	1683 bp downstream
Tssr9017	transcription start site region 9017	1645 bp downstream
Tssr9018	transcription start site region 9018	1627 bp downstream
Tssr9019	transcription start site region 9019	1594 bp downstream
Tssr9020	transcription start site region 9020	823 bp downstream
Tssr9021	transcription start site region 9021	803 bp downstream
Tssr9022	transcription start site region 9022	315 bp downstream
Tssr9023	transcription start site region 9023	241 bp downstream
Tssr9024	transcription start site region 9024	205 bp downstream
Tssr9025	transcription start site region 9025	74 bp upstream
Tssr9026	transcription start site region 9026	276 bp upstream
Tssr9027	transcription start site region 9027	386 bp upstream
Tssr9028	transcription start site region 9028	426 bp upstream
Tssr9029	transcription start site region 9029	1006 bp upstream
Tssr9030	transcription start site region 9030	1041 bp upstream
Tssr9031	transcription start site region 9031	1100 bp upstream
Tssr9032	transcription start site region 9032	1683 bp upstream
Tssr13890	transcription start site region 13890	1896 bp upstream
Tssr13891	transcription start site region 13891	1651 bp upstream
Tssr13892	transcription start site region 13892	1584 bp upstream
Tssr13893	transcription start site region 13893	1567 bp upstream
Tssr13894	transcription start site region 13894	818 bp upstream
Tssr13895	transcription start site region 13895	774 bp upstream
Tssr13896	transcription start site region 13896	247 bp upstream
Tssr13897	transcription start site region 13897	219 bp upstream
Tssr13898	transcription start site region 13898	1066 bp downstream
Tssr13899	transcription start site region 13899	1134 bp downstream
Tssr13900	transcription start site region 13900	1144 bp downstream
Tssr13901	transcription start site region 13901	1705 bp downstream