rs45672461 SNP Detail

Summary

• ID
  rs45672461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105432987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGGGCTA TAGATTTCAT
  CCAGGACAAC TTTTGAAACA GCTCAAGACA ACAAATCAAA CAGAGAAAAT AATTAACACA
  TAGAAAACCT GGATACTAGT TCTCAGAACT GGAGGACAAC AACACACAAG CTCTTGGCTC
  AGTACACAGA AGTTATCCAA GCCAAAATTT ATTAACTGTG AAACTTGAAA TAACATGCAT
  Y
  GAAGAAACCC AAATGGCTTC TAGGGAGGGA AGAAGGTAGA ACATTAGTGA AGTCTCCGAA
  ACCAGAGTGG CACTGGACTT CTAAAAATAA ACACTGAAAG GTAAGCTCTG TGGGAAGTTA
  AGTGCGAGTT ATTGAAATTG ATTGAACTGA TGAATATTTC AAAATAACAA GGTCTTCAAT
  ATGCTTTTCA TACCATCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/LacJ
ss61978369	NES17129515	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/LacJ
rs45672461					SNP	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61978369	NES17129515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105432987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6065	CpG island 6065	1671 bp distal
Rnf180	ring finger protein 180	1581 bp upstream
Rr389014	regulatory region 389014	477 bp upstream
Rr485531	regulatory region 485531	1560 bp distal
Tssr123960	transcription start site region 123960	1813 bp upstream
Tssr123961	transcription start site region 123961	1650 bp upstream