rs45672659 SNP Detail

Summary

• ID
  rs45672659
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80076488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT AGACATGGGG AGAGAAACCT
  M
  CATGAGTGTG GAGTATTGTG TGCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148214322	ENSMUSSNP177632	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325030265	CHEV_15_80022717	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs45672659					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80076488 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505907	regulatory region 505907	1882 bp distal
Rr505908	regulatory region 505908	142 bp distal
Rr505909	regulatory region 505909	225 bp proximal
Rr505910	regulatory region 505910	726 bp proximal
Tssr4660	transcription start site region 4660	823 bp upstream
Tssr132185	transcription start site region 132185	409 bp downstream
Tssr132186	transcription start site region 132186	105 bp downstream
Tssr132187	transcription start site region 132187	713 bp upstream
Tssr132188	transcription start site region 132188	766 bp upstream
Tssr132189	transcription start site region 132189	786 bp upstream