rs45674129 SNP Detail

Summary

• ID
  rs45674129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC TCCACCGTAT GCTATAAGCA
  R
  GTCATGAAAT ATCAGGGGGG GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146738253	ENSMUSSNP5267044	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320335120	CHEV_2_70892715	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45674129					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885002 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			689 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			670 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			855 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			904 bp proximal
Rr558664	regulatory region 558664			1079 bp proximal
Rr558665	regulatory region 558665			1606 bp proximal
Tssr18237	transcription start site region 18237			1073 bp upstream
Tssr24467	transcription start site region 24467			846 bp downstream
Tssr24468	transcription start site region 24468			858 bp downstream
Tssr24469	transcription start site region 24469			876 bp downstream