rs45675253 SNP Detail

Summary

• ID
  rs45675253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81113101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTCCCC AACATGGGTG
  CTGGGCCCCG TCTGATGACG TAAGTTCTTA ATAGACTGAA GACTGACTAG GAGCAAGAAG
  GAATTCTGCT AGGAGACTGC CTCTATCTTC ACGTAGAATT TCCAGTCCCC TGGCCTTACC
  CCATCACATC CTGAGTTCTC TAGGCCTGCT TCACTGCGTG CACCAACACT ATACAATAAC
  Y
  CTAGGGCTGG AGGGATGGCT CAGTTGGTGG AGTGCTCACT GTGTAGCTGT GAGGCCTGAG
  TTCAGATCCT CAAAACCCAT GTACAAAGCT GGGTACAGCA GCAGGTGCCT TTAACCCCAG
  TCTGAGGAGG TAGAGACAGG TAACTCCCCG AAGCTTGCTG GCCACATAAG CTAGGTTTGT
  AGGGAGATTC TATCTCATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss62937169	NES17409717	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs45675253					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937169	NES17409717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81113101 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	1559 bp downstream
Rr393005	regulatory region 393005	362 bp downstream
Rr393006	regulatory region 393006	1904 bp upstream