rs45675685 SNP Detail

Summary

• ID
  rs45675685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164035810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGCTTAA TGAAACAACC
  CCATTTATGG GGTTCCTCTG GAAGAGGAAG AAGAAATATT TCAGGAGCAA AAATCCTATT
  CATACATTTA TCATTTCCAC TTCTTGTGAT GTGTATTGTT CCCAAAGGGC CTGTTCTAGG
  AAAAATCAAG AATTCAACTT TGCTGATATA TCCGCCTAGG CAGCCCAGTA GCTCTACAGG
  K
  AATTGGCAGG GAATAAATAA CTTTATCTTA TGACCTTGTA ATTATTTCCC AAATTCCGTT
  TATCTTACCT ACATTGACTC ACACGCAAAA CCTCCAACAA GATTCACAGG GTTCTATCAC
  CTAAGGAAGA GGGTCTCAAT GTTTATGCTA GCCATTCATC TAGTCAAGAA ACATTACGAT
  CAAAGTATCT CTTAAAATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss145974619	ENSMUSSNP6367563	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs45675685					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164035810 () rs orientation: forward

Symbol	Name	Function Class
F5	coagulation factor V	Intron
Rr422161	regulatory region 422161	251 bp proximal