rs45675688 SNP Detail

Summary

• ID
  rs45675688
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:24568869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA CAAAGACCAC TATGGCAGTG
  C
  TGCTACAGTT TCTGTGCTGC CTGGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145351337	ENSMUSSNP569425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325330792	CHEV_17_24486840	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45675688					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24568869 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca17	ATP-binding cassette, sub-family A member 17			Intron
				Noncoding-Transcript-Variant
Cpgi8716	CpG island 8716			928 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14			960 bp distal
Rr405082	regulatory region 405082			1823 bp upstream
Rr523280	regulatory region 523280			974 bp proximal
Rr523281	regulatory region 523281			1124 bp proximal
Rr523282	regulatory region 523282			1324 bp proximal
Tssr146725	transcription start site region 146725			1158 bp downstream
Tssr146726	transcription start site region 146726			1177 bp downstream