rs45676051 SNP Detail

Summary

• ID
  rs45676051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122630256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGCTGC GGGTTTAGTC
  CTCAGCATCA CATACAAGCA CAGACCACAG GGGACATGAT ATAAAAGCCA AACAGTCAGA
  GAGACGGCAA CTCTGTATCA CTGGGCCCTT TACGGTGGAC AAAGGATGGC GCTTCTGGGC
  TTCACAGAGG AAGTTAGCAC CGGAGAGCTG GCACTTCCTG TTGCTTTGTG TACAGAAATG
  Y
  AGCATCTGAG AGTGTCATTG TTCACATCTT ATTCATCTAG AATGGCGCAA ATTAATATGG
  AAGAAAGACA AGAAAGCAAG AGAGGGGGGA GGGAAAACCA AGAAGGATGG CTGGGAAATT
  CCGGATGTGC TCTTTTTATT GTTTGTTTTT CAAGACAGGG TTTCTCTGCC CACCCCTGCC
  TCCCTGTGCT GAAATTAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938545	NES16184794	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45676051					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938545	NES16184794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122630256 () rs orientation: forward

Symbol	Name	Function Class
Rr638242	regulatory region 638242	938 bp proximal
Tssr58692	transcription start site region 58692	1284 bp upstream
Tssr62939	transcription start site region 62939	1075 bp downstream