rs45676822 SNP Detail

Summary

• ID
  rs45676822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCG GGGCCGCCAC CTCGGGCGTG
  R
  GAGAGGCTGC AGCTCCGGGG TGCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133014996	ENSMUSSNP2172436	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321754661	CHEV_6_17413456	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45676822					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	within coordinates
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	within coordinates
Rr626800	regulatory region 626800	18 bp proximal
Rr626801	regulatory region 626801	61 bp proximal
Rr626802	regulatory region 626802	593 bp proximal
Tssr55050	transcription start site region 55050	14 bp downstream
Tssr55051	transcription start site region 55051	99 bp upstream
Tssr55052	transcription start site region 55052	293 bp upstream
Tssr55053	transcription start site region 55053	370 bp upstream
Tssr55054	transcription start site region 55054	429 bp upstream
Tssr55055	transcription start site region 55055	445 bp upstream
Tssr55056	transcription start site region 55056	471 bp upstream
Tssr55057	transcription start site region 55057	636 bp upstream
Tssr55058	transcription start site region 55058	676 bp upstream
Tssr55059	transcription start site region 55059	715 bp upstream