rs45677580 SNP Detail

Summary

• ID
  rs45677580
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102336026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGCAAAG AAAGATAGAA
  ATGATAAATC AAGATAAATC ACAAAAATGT AGTGGAAGCA TGTTAGTTCT ATACATTGCC
  TCAAAAAATG TAAACATGGG AAAGATGTCA AAGATCTGGA GATAAATACA GTTTTCCAAT
  AGAGGATCTC CAATAGAGAT CTTTTATCAA ACATAAATAC TTGGTCAAAA GTTTGACTCA
  T
  TAACTGCTCA GACCTGTCCA ACCTGTAGCT GAGGGCAGCT GTGAATACAG GCCAAACACA
  AAACTGTAAA ATGTTAAGTT TCTTTATGCG ATTTTGTTCT CCAGAGTGAA CTTTGTAGAC
  TACAATATCA AAAGGTTGCA CCTAGCAACC AGTGCCTCCA CGGTCCTCAG GGCCGCGAAG
  GGAGGGGGAA GAGCCTGGAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145571401	ENSMUSSNP5512418	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45677580					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102336026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	155 bp proximal
Gm45527	predicted gene 45527	600 bp upstream
Rr652623	regulatory region 652623	within coordinates
Rr652624	regulatory region 652624	441 bp proximal
Trim68	tripartite motif-containing 68	within coordinates
Tssr73953	transcription start site region 73953	433 bp downstream