rs45678344 SNP Detail

Summary

• ID
  rs45678344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCATTT TCCTGTGACC
  CTTCACATTT ACAGAATTGG GAGGTGCTAT TTGAGCAGAA TTATAATTTA ATAAGTGCAG
  AGACAGAGTT CTGTTTATCT TTGGGTATCT ATCTTCTTAG GAAACAAATA ACAACAGCCA
  GAGTCCTGGA GAGATGGCTC AGCAGTCAAG AGTACTTGTT CTTGCAGAAG ATCCAAGTTC
  Y
  ATTCCCAGAA TCTACTCGGT GACGTATAAC ACTCATAACT CCAGTTCTAG GGGAGACAAT
  GCCCTCTTTT GACTTCCTCA TGCACCAAAT ACACAGGTAT GCACAGACAT ATATGGGAAC
  AAAAGGTTCA TGCACATAAA TAAATCTAAA AAAAATTAAG GTTCAGCAAA CTAGCTAGCT
  TTTTGTTTCT GTTTCTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647267	ENSMUSSNP5482168	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss322398755	CHEV_7_117910417	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45678344					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366110 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1303 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	1180 bp proximal
Rr653308	regulatory region 653308	890 bp proximal
Rr653309	regulatory region 653309	1518 bp proximal
Tssr68503	transcription start site region 68503	1160 bp upstream
Tssr68504	transcription start site region 68504	1203 bp upstream
Tssr68505	transcription start site region 68505	1235 bp upstream
Tssr68506	transcription start site region 68506	1266 bp upstream
Tssr68507	transcription start site region 68507	1712 bp upstream
Tssr68508	transcription start site region 68508	1927 bp upstream