rs45678372 SNP Detail

Summary

• ID
  rs45678372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193906378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAAAGAGT GTTTGAAAGT AGGGGAGGGG GGGATCCACT
  ATTTACTTAC TCAGCAACCA TTAGAGACTC TAGTTTCTCA CAGAGGTTGA AAGCTCTGTG
  Y
  CTGAAATCCT CTGACCTACT CTTGTGAGCA TACATTTAAG CATGTTTGTG TGTGTCCATG
  GGGAGGGTGT GTGATCCACA TGTCTATGCA TATGTGTGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365282	NES15865015	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45678372					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365282	NES15865015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193906378 () rs orientation: forward

Symbol	Name	Function Class
4930503O07Rik	RIKEN cDNA 4930503O07 gene	1311 bp upstream
Rr426624	regulatory region 426624	949 bp distal
Rr426625	regulatory region 426625	545 bp distal
Rr426626	regulatory region 426626	894 bp distal
Rr426627	regulatory region 426627	768 bp distal
Rr426628	regulatory region 426628	within coordinates
Rr426629	regulatory region 426629	1662 bp proximal