rs45678421 SNP Detail

Summary

• ID
  rs45678421
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21695107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATGGACCTGG AGCCTAGAGA GAAATGAGCT CGGAAATCCG
  GAGCAAATGA GGAGTGGTCC CTGAAACGTC AGTGGCCCTG GATGTCGTGA CTGCTAAAGA
  G
  AAAAAGAGGA GGAGGCTGTG GGAGTGGCTG GCCAAGAGCT CAGCAGGTTT CCCTGATTGC
  TTCTCATTCC CCTGTCCCTT ACATCCCCGT CTCTTATAAA C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145288253	ENSMUSSNP4726552	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45678421					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21695107 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	within coordinates
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	1629 bp distal
Rr522959	regulatory region 522959	684 bp distal
Rr522960	regulatory region 522960	1141 bp distal
Rr522961	regulatory region 522961	88 bp distal
Rr522962	regulatory region 522962	within coordinates
Rr522963	regulatory region 522963	1289 bp proximal
Tssr142877	transcription start site region 142877	979 bp downstream
Tssr142878	transcription start site region 142878	572 bp downstream
Tssr142879	transcription start site region 142879	62 bp upstream