rs45680218 SNP Detail

Summary

• ID
  rs45680218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74364637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC TGGCTCTTTC ACATGGGCAG
  R
  GCCTTCTTAG CACCCTCCTT AATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148664164	ENSMUSSNP3394836	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321569511	CHEV_5_74600001	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45680218					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74364637 () rs orientation: forward

Symbol	Name	Function Class
D5Buc50	DNA segment, Chr 5, Bucan 50	1566 bp distal
Rr613252	regulatory region 613252	1377 bp distal
Rr613253	regulatory region 613253	1582 bp proximal
Scfd2	Sec1 family domain containing 2	840 bp downstream