rs45680603 SNP Detail

Summary

• ID
  rs45680603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89720042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTCCCA GCACGCCCGA
  GCTCTTACTC TCAGCTCAGG CTGATTGAAG CGCCGCAGGC CTGGTGTAGA GCTGACCTCT
  GTAGCAGCCT ACTTGAGTAT GGTGAGTAAA TGCCATCTTA TGTTGTCTTC CGGATGCTGC
  TGAGCAGAAA AGAGCTGTTC TTTGTACGAC AAGAGCAGAG ACCCAGAAGA GACAAAGGAG
  R
  GGAGAGGAAA CGCAGAGTGT AAGAATTCTC TTTCCTCTTT AGGAATACAT TCTATTGTTT
  CGGTTCATTT GTTTGTTTCT CGATACAAAA GGCAATATGG TCACAAAACA GTAGAAAAAT
  CTGAGAAATA CAGAGAATTA GAATGAGGGA TTAATTATAA CCCCACTAAT CTGACTTGAC
  CTTTGGTACT TTGATACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145292164	ENSMUSSNP7177017	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45680603					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89720042 () rs orientation: forward

Symbol	Name	Function Class
Tssr2327	transcription start site region 2327	826 bp upstream