rs45680677 SNP Detail

Summary

• ID
  rs45680677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACGTTAG GTTTCTTAAT
  CTGTAACTTT AATAGATCGA ATATTAATCT TTAAAAGCAT TGTTAAGCTC TAAATAGTTT
  TTTACGGCCC TCAGAAAAAC CATCTAAGGG TACCAAAGAG CATACTTTGA ACAGAAGCAA
  CATAAAAACA AAGCAAGCTT TCCATGCCTT CCATCCTGAA GGATCAGGGC CAGCGGAGAT
  R
  GTCAGCGGAT ATAAATCGGT GTGAGAGTGT GAGGTCCAGC TGTGCTGTAG CAGAAGCTTG
  GGAGCCTCAC CGGTGAATGC CTGTATCCTG CGGGAAAGCA TCCTTCCCCA TGTGGGAGAG
  GTGGAGTGCA AAGGCCTACA GTGGCTAAGC CATTGATGAT GGGCACTCTA TCAAACTTGG
  CTCCCTTCCT CTTTGTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136042975	ENSMUSSNP5501079	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321009819	CHEV_3_145972636	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45680677					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015427 () rs orientation: forward

Symbol	Name	Function Class
Rr586996	regulatory region 586996	1256 bp proximal