rs45681883 SNP Detail

Summary

• ID
  rs45681883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86234602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCAGCAAC ATCAGAAGCC CAGGCACGAA TTCAAGACTG
  AACACGATTA TTTTAAGGCC AGGCTTACGG TTCCTTTTGT CAATAATTTT TAAGAATACA
  Y
  TTGAGATGTA TCATCTTCCG GCCACACCTC ATTTATAAAA CAAAACAAAA ACTACCACTT
  ACGTTCATAT AGAGCTGGGG TGTGGCTCAG TGGTAAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146155862	ENSMUSSNP4473391	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325489979	CHEV_17_86326514	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45681883					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86234602 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	1130 bp proximal
Rr532332	regulatory region 532332	1362 bp proximal
Tssr149724	transcription start site region 149724	1389 bp downstream