rs45682453 SNP Detail

Summary

• ID
  rs45682453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98849552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCGTGG GTTCCAGGTC
  TACGAACACT GCCCGGGGCA CATGCTTGCC AGCTCCTGTC TCACTGAAGA AGGTGTTGAA
  GGAGTCATCT CCTCCCCCAA TGGTCTTGTC ACTTGGCATC TGGCCATCAG GCTGGATGCC
  ATGTTCCAGG CAGTAGAGCT CCCAGCAGGC ATTGCCGATC TGGACACCAG CCTGGCCAAC
  R
  TGGATGGAGA TGCACTCACG CTGTGGAAAG AGGGAAAAAA ATTATAAAAT TAAGCTGTTA
  TAATATTAAG CTGTATTTCT ATTTTAGATC TTAATAGATT TCTAAAGTGT TTCTAAAAAT
  AGAAATATTG TTGAAATTTA TTTGGAGTCA CATCCCTAAT AACAGGAACA ATGAGGAGTA
  CTCACTACAA ACACCAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622766	NES17045885	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45682453					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622766	NES17045885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98849552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7685	CpG island 7685	1318 bp proximal
Gm49450	predicted gene, 49450	within coordinates
Rr370012	regulatory region 370012	1547 bp upstream
Rr404613	regulatory region 404613	1799 bp upstream
Rr509234	regulatory region 509234	1792 bp distal
Rr509236	regulatory region 509236	1096 bp proximal
Rr509237	regulatory region 509237	1597 bp proximal
Rr509238	regulatory region 509238	1870 bp proximal
Tssr132970	transcription start site region 132970	1380 bp upstream
Tssr136333	transcription start site region 136333	393 bp upstream
Tssr136334	transcription start site region 136334	1804 bp downstream
Tssr136335	transcription start site region 136335	1857 bp downstream
Tssr136336	transcription start site region 136336	1870 bp downstream
Tssr136337	transcription start site region 136337	1916 bp downstream
Tssr136338	transcription start site region 136338	1926 bp downstream
Tssr136339	transcription start site region 136339	1966 bp downstream
Tssr136340	transcription start site region 136340	1991 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates