rs45682741 SNP Detail

Summary

• ID
  rs45682741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154977438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAGATCT GCCTGCCGCT GCCTCCCCAG TGCTGGGACT
  AAAGTTGTGC ATCACTATTC CCACTGAGCA TTCTGATTTT ATTAAAACAA AAACAAAGAA
  Y
  ATCAGTTCTA TTCCTACCCA AATTTTCTGA TAAACCTGGA AATGGTAGGG TTTTCAGATA
  GTCCTAATAA GGCTCCGAAG CATCTTGGAA GGGCCAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145775349	ENSMUSSNP3851342	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45682741					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154977438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	1836 bp distal
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	within coordinates
Rr28750	regulatory region 28750	1637 bp distal
Rr396412	regulatory region 396412	1818 bp downstream