rs45682972 SNP Detail

Summary

• ID
  rs45682972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99091482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGGATCA AATCCTCAGG
  GCGCCTTGTT ATCTTTCTGG GGAAATCCAT TTTCTCGATT CCCTTGAGAA TCAAATTGTA
  GGTCATCATT TGGTCTATCC CAGAAAAGGG AGGGCTGGAG AAGACACAAA ATAAGACGCA
  CTTCAGAGAG AGTCTTGTGG GGCTCCTCTT TTCCTACTTC TCTTTCCACT CCGGTTCTGT
  Y
  CTCTGACCCT CCCTCTTAGT TACTTTACAA CAAATTGGGG TATATTGTGG AAAGCCTTTA
  ATCAATTTCC CATCACTTAA ATAACCCCTA AAAGGAGAAG ACAGAAAGGG AGGGGGTGTG
  ATTTTCTTGT GTGTGTGTGT GTGTGTGTGT GTGTAAGAAG GTGAGTAGGA AAAGCCTCCT
  TTCTACGCTG ACAAAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61200726	NES16706808	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45682972					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200726	NES16706808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99091482 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Tssr52014	transcription start site region 52014	140 bp downstream
Tssr52015	transcription start site region 52015	163 bp downstream
Tssr52016	transcription start site region 52016	199 bp downstream
Tssr52017	transcription start site region 52017	254 bp downstream