rs45683063 SNP Detail

Summary

• ID
  rs45683063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54867982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGATTG AATGTTTTCT
  CATTTGGCTC CTATAGAAGA ACAATCTGCT GTGCGCTCTC TAGGCTCCTT GCCCTGCTGA
  TTTTCTCCAT AACACGCCTC ACTGGCTGTC ATTCTGTCCA TCTCCTGGAC GACGGTTCCA
  GAGAAAGGAC TTTGTTCTCT TTCAGTAGCT GCAACCTAGT TCCAATACAG GAACTGGCAC
  R
  TTCAAGGTAA TAAACACTGA TACATGGATA AACAATGTCC CTTCTTGATA TGCTGTGCAA
  AATTCTGAAA AACCCTTTTC CACTTAGGTT AGTAGAGCTA GTAGGTTTTC CATGTCCTGA
  CAGTCCCTTT CACACCCCAG AGCAAGGACA CCTCAGAGAC TAGCAGATAA GAGAACCCCG
  GGTACCTCAC TACCACACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61403639	NES16782421	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A	A		A
ss322966296	CHEV_9_54808505	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45683063					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61403639	NES16782421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54867982 () rs orientation: forward

Symbol	Name	Function Class
Rr204186	regulatory region 204186	within coordinates
Rr209620	regulatory region 209620	219 bp proximal