rs45683086 SNP Detail

Summary

• ID
  rs45683086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24825984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACAGGCT ACCATTAAGC
  CACAGAAGGG CCCGTGCACA TCCAAATGCC TGTACGCGTG CCCTGGCCAG CAAATTCATG
  AGAGCTGACT TCATGCTCGT GTGATTCTCA ATCGAAACCC AAACAAGCCC TATACTTTGC
  CACCCCAAAC AGTGAAGGCA GGTGTGCTGG GGTTCCTGGC TCCCCAGGAG CCATCTAGTG
  R
  CCCAGGCCAC GCTGCGACCA GTTATCACTG TCTGAAACCC CAGTCCTCTC AGGTTTTCTT
  TCTCCCCCGC AGTGCCCAGC CTTACAGTGA GATAATGCCC TTCAGGGACC CACTTGTGGC
  TACTGAAAGC ATCAGGGGCT TAACTCAGTC CACCCTTAAA CGAGCCTACT GAACCTTAGC
  CCAGGACGGA CGGCTTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148097838	ENSMUSSNP6225038	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45683086					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24825984 () rs orientation: forward

Symbol	Name	Function Class
Gm71653	predicted gene, 71653	951 bp upstream
Rr608374	regulatory region 608374	520 bp distal
Rr608375	regulatory region 608375	1907 bp proximal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	1660 bp downstream
Tssr50356	transcription start site region 50356	1673 bp downstream