rs45683380 SNP Detail

Summary

• ID
  rs45683380
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150322301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATA TTCCTGACCT GTGAGTGTCG
  K
  TTAGGTACTA AGAGTAGAGG AAATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148050673	ENSMUSSNP3161580	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss321428734	CHEV_4_149611953	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45683380					SNP	G	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150322301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	44 bp distal
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	239 bp downstream
Rr605239	regulatory region 605239	882 bp distal
Tssr40390	transcription start site region 40390	1077 bp downstream
Tssr40391	transcription start site region 40391	1064 bp downstream
Tssr40392	transcription start site region 40392	1048 bp downstream
Tssr40393	transcription start site region 40393	1035 bp downstream
Tssr40394	transcription start site region 40394	1025 bp downstream
Tssr40395	transcription start site region 40395	636 bp downstream
Tssr40396	transcription start site region 40396	605 bp downstream
Tssr40397	transcription start site region 40397	502 bp downstream
Tssr40398	transcription start site region 40398	139 bp downstream
Tssr40399	transcription start site region 40399	107 bp downstream