rs45683591 SNP Detail

Summary

• ID
  rs45683591
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26086610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAGAAG GCCATGTTTA
  TTTTTTTTGT TTCAACTAAC CAACACAGAG ACCTAGGCAA AAGAAGCAAA CAATTTAGTA
  TTTTAAAAAG GAATCAATTA AACATGAGAA TTTAGGTGGT TTTTTTTTTT TTTTAAGAAA
  AACTAAGGCA AAGAGAGAGA TTTGCATATT CAAGGTGTAA AATTTCCTTC AAGTTCATTT
  M
  CAAAAGCCTC AGTATTTTCT TAGCTCTGGA TTTGAAAATG GTACTTTTTC GATCCAAACA
  CACAGAAATG GGTTCTAAGA AGATGATCCT GAAGACGATG TGGCCTCCAA AGGCTTTTTT
  TTTTTTAATT TTTTAAATTT CTGGTCAATA GTGTCTAATA ATCTGCTGCG ACGGTTAAAA
  GGAGAAAGAC ATCTTTATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582831	NES16320608	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45683591					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582831	NES16320608	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26086610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	337 bp proximal
D830025C05Rik	RIKEN cDNA D830025C05 gene	418 bp upstream
Gm45570	predicted gene 45570	1488 bp upstream
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	within coordinates
Rr368506	regulatory region 368506	840 bp upstream
Rr400804	regulatory region 400804	354 bp upstream
Tssr76686	transcription start site region 76686	502 bp upstream
Tssr76687	transcription start site region 76687	1100 bp upstream
Tssr80717	transcription start site region 80717	406 bp downstream
Tssr80718	transcription start site region 80718	865 bp downstream
Tssr80719	transcription start site region 80719	947 bp downstream
Tssr80720	transcription start site region 80720	1017 bp downstream