rs45683965 SNP Detail

Summary

• ID
  rs45683965
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129227968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT TCCCAAGGTC CTGAGTTCAA
  W
  TCCCAGCAAC CACATGGTGG CTCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147438502	ENSMUSSNP1551460	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321312031	CHEV_4_129011419	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45683965					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129227968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	431 bp proximal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	1184 bp upstream
Rr367702	regulatory region 367702	1632 bp upstream
Rr600200	regulatory region 600200	1146 bp proximal
Rr600201	regulatory region 600201	1185 bp proximal
Tssr39141	transcription start site region 39141	1418 bp upstream
Tssr39142	transcription start site region 39142	1787 bp upstream
Tssr39143	transcription start site region 39143	1841 bp upstream
Tssr43492	transcription start site region 43492	1068 bp downstream
Tssr43493	transcription start site region 43493	1122 bp downstream
Tssr43494	transcription start site region 43494	1149 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	1357 bp upstream