GATAACTGCC GAATGCAACT AGGCCTCTTA TTTTCTTACA CTCAACTGTA CCTCAAGCCA CCCTGCCTCC CCTTTAAGCC TGAAATTAAA GACCTGGAGT TAGGGTACAC CATCAACGCG ACTCCAGCCC CCCTCCCCAG TCTGTGCAAA GAGAGCCCCA GCCAGCTTTC AAGTCAGTCA CTGCTGTAGA GAGAGACCAA R TCTTCCGGAG CACCATCCCG CCTGCGCAGT CTGTAGTCAC AGTTTGCCCC TGAGGTGAAG TGACGTGCTC AGGTCCCCTT CAATGGAGAC TCAAGCAGTC TCTGAAAGCG CAAGCTTCCT TTTCGCTCGC CGGGCAAACG TGCACCCCAG GCGCTGTGTC CTCTAGCGGC GAACTCTCGC AGCTCGTCTG TGAGCGCTCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss62435913 | NES17250937 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | A | G | G | A | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs45684257 | SNP | G | G | G | G | G | G | A | G | G | G | A | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss62435913 | NES17250937 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr14:67470659 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi6657 | CpG island 6657 | 955 bp distal | ||||||
Cpgi6658 | CpG island 6658 | 7 bp proximal | ||||||
Cpgi6659 | CpG island 6659 | 971 bp proximal | ||||||
Cpgi6660 | CpG island 6660 | 1690 bp proximal | ||||||
Ebf2 | early B cell factor 2 | 82 bp upstream | ||||||
Gm20675 | predicted gene 20675 | 81 bp upstream | ||||||
Rr297418 | regulatory region 297418 | within coordinates | ||||||
Tssr126327 | transcription start site region 126327 | 2 bp downstream | ||||||
Tssr126328 | transcription start site region 126328 | 76 bp upstream | ||||||
Tssr126329 | transcription start site region 126329 | 225 bp upstream | ||||||
Tssr126330 | transcription start site region 126330 | 692 bp upstream | ||||||
Tssr126331 | transcription start site region 126331 | 1378 bp upstream | ||||||
Tssr126332 | transcription start site region 126332 | 1410 bp upstream | ||||||
Tssr126333 | transcription start site region 126333 | 1521 bp upstream | ||||||
Tssr126334 | transcription start site region 126334 | 1585 bp upstream | ||||||
Tssr126335 | transcription start site region 126335 | 1635 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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