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rs45684257 SNP Detail
Summary
  • ID
    rs45684257
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:67470659 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATAACTGCC GAATGCAACT
    AGGCCTCTTA TTTTCTTACA CTCAACTGTA CCTCAAGCCA CCCTGCCTCC CCTTTAAGCC
    TGAAATTAAA GACCTGGAGT TAGGGTACAC CATCAACGCG ACTCCAGCCC CCCTCCCCAG
    TCTGTGCAAA GAGAGCCCCA GCCAGCTTTC AAGTCAGTCA CTGCTGTAGA GAGAGACCAA
    R
    TCTTCCGGAG CACCATCCCG CCTGCGCAGT CTGTAGTCAC AGTTTGCCCC TGAGGTGAAG
    TGACGTGCTC AGGTCCCCTT CAATGGAGAC TCAAGCAGTC TCTGAAAGCG CAAGCTTCCT
    TTTCGCTCGC CGGGCAAACG TGCACCCCAG GCGCTGTGTC CTCTAGCGGC GAACTCTCGC
    AGCTCGTCTG TGAGCGCTCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss62435913 NES17250937 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs45684257 SNP G G G G G G A G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss62435913 NES17250937 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:67470659 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6657 CpG island 6657 955 bp distal
Cpgi6658 CpG island 6658 7 bp proximal
Cpgi6659 CpG island 6659 971 bp proximal
Cpgi6660 CpG island 6660 1690 bp proximal
Ebf2 early B cell factor 2 82 bp upstream
Gm20675 predicted gene 20675 81 bp upstream
Rr297418 regulatory region 297418 within coordinates
Tssr126327 transcription start site region 126327 2 bp downstream
Tssr126328 transcription start site region 126328 76 bp upstream
Tssr126329 transcription start site region 126329 225 bp upstream
Tssr126330 transcription start site region 126330 692 bp upstream
Tssr126331 transcription start site region 126331 1378 bp upstream
Tssr126332 transcription start site region 126332 1410 bp upstream
Tssr126333 transcription start site region 126333 1521 bp upstream
Tssr126334 transcription start site region 126334 1585 bp upstream
Tssr126335 transcription start site region 126335 1635 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory