rs45684690 SNP Detail

Summary

• ID
  rs45684690
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG GAGGGAAGCC TCCCGCCCAC
  C
  GTCCGGCCCC CAGGGACCCA CGTGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132549611	ENSMUSSNP3717670	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323783681	CHEV_11_88860650	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45684690					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	1035 bp downstream
Rr402858	regulatory region 402858	within coordinates
Rr454274	regulatory region 454274	1834 bp distal
Rr454275	regulatory region 454275	25 bp distal
Rr454276	regulatory region 454276	within coordinates
Rr454277	regulatory region 454277	572 bp proximal
Trim25	tripartite motif-containing 25	40 bp upstream
Tssr104062	transcription start site region 104062	49 bp upstream
Tssr104063	transcription start site region 104063	106 bp upstream