rs45685004 SNP Detail

Summary

• ID
  rs45685004
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58661756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCT GAGACCGCCT GAGCCTGGAG
  A
  TGGGGATAGG GATGGGGTAG TGGTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146566693	ENSMUSSNP5017063	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss325872637	CHEV_19_58747814	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45685004					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58661756 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	1245 bp proximal
Tssr5571	transcription start site region 5571	197 bp downstream
Tssr157263	transcription start site region 157263	1603 bp downstream
Tssr157264	transcription start site region 157264	1545 bp downstream
Tssr157265	transcription start site region 157265	1493 bp downstream
Tssr157266	transcription start site region 157266	239 bp downstream
Tssr157267	transcription start site region 157267	220 bp downstream
Tssr157268	transcription start site region 157268	166 bp downstream
Tssr157269	transcription start site region 157269	417 bp upstream
Tssr157270	transcription start site region 157270	480 bp upstream
Tssr157271	transcription start site region 157271	1732 bp upstream
Tssr157272	transcription start site region 157272	1743 bp upstream
Tssr159957	transcription start site region 159957	1585 bp upstream
Tssr159958	transcription start site region 159958	1458 bp upstream
Tssr159959	transcription start site region 159959	187 bp upstream
Tssr159960	transcription start site region 159960	139 bp upstream
Tssr159961	transcription start site region 159961	1824 bp downstream