rs45685241 SNP Detail

Summary

• ID
  rs45685241
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTACAT GCTAGGTGGG
  CACTCTATCC TGAGCTGCAG CTGGGCTTCT GGAAGTTCAT TGCTCCAAGT AACACCTTCA
  CGTGCTGTGC TCTGACCTTG CTGGGCCTTT CTGGACCATC ATTTATTAAC TTTTTTCCTA
  CCTGTATATC TAACATTCTG CCTGAAGTAG AATTTATTTG TTTTTAAACT CAGACTTAAA
  M
  ATTGGTCTCA AATCCCTTTG TGTCAGCATT CAATACTTAG AGGCTCTCCA CCTGGAAACT
  GTAAATAGAG AGAAACTTCA AGCAATTCCA TTAATATCAG GAACAAGACA AGCTTGTCCA
  CTCTCTCCAT AGAGCACTTT TCAATAAGCA CTTGAAGTCT TAGCTAGAGT GATAAGACAA
  TTGAATGAGA GCCACTGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63158196	NES17453821	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	C		A	A	A		A
ss325658630	CHEV_18_66082488	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45685241					SNP	A	A	C	A	A	A	A	A	A	C	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63158196	NES17453821	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055905 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	466 bp downstream
Gm50119	predicted gene, 50119	1222 bp downstream
Gm58551	predicted gene, 58551	1151 bp upstream
Rr346799	regulatory region 346799	305 bp distal
Rr346800	regulatory region 346800	1496 bp proximal
Rr353052	regulatory region 353052	504 bp distal
Rr353053	regulatory region 353053	1895 bp proximal
Rr393825	regulatory region 393825	1379 bp upstream