rs45686407 SNP Detail

Summary

• ID
  rs45686407
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54387334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC TCTTGGTAGA GCCTACACTT
  A
  GCTATAGCTG TAAAGTTCCT GCCCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139556820	ENSMUSSNP5184846	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324635117	CHEV_14_54769552	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45686407					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54387334 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	1009 bp downstream
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdv5	T cell receptor delta variable 5	676 bp upstream
Tssr128536	transcription start site region 128536	637 bp upstream
Tssr128537	transcription start site region 128537	618 bp upstream
Tssr128538	transcription start site region 128538	597 bp upstream
Tssr128539	transcription start site region 128539	534 bp upstream
Tssr128540	transcription start site region 128540	1522 bp downstream