rs45686743 SNP Detail

Summary

• ID
  rs45686743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128065732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCAGTTC ATACCCCATT
  GCATTTAGGA GACGCCCTTC AGCTAAAAGG GTTATCCCAG CAGTGTGATG TGGAGAGTCG
  GGACAGAGTG AGAAAATCTG CCTAGTCCAC AGAAAGTAAA ACTTGACCAG CAGACATCCC
  TGCTGCACAA AAAAGAAAAA CAGCCACTGT GAAGACAGAT CTGGGAGACA GGAGACAATC
  R
  GTACCCATTC CACAGCATCA TAAGGCATAG GAACACCAGA GTCTCGCTTC AACTGACACC
  CCCTCCTTAT GCTGAACATA CAATCTTTCT TTTTCTGAAC TCTTTATTTT TCAGAGGTTG
  TAAATTTTGG GTATGTGTAT GGGTAAGTGC ACAGGTATGG CACGGCGGTT CCTGAGAGGC
  CAGAAGCATG AGCTGCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61060889	NES16065792	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45686743					SNP	G	A	A	A	G	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060889	NES16065792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128065732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	1770 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr656042	regulatory region 656042	1919 bp distal
Rr656043	regulatory region 656043	1147 bp distal
Rr656044	regulatory region 656044	1661 bp distal