rs45687212 SNP Detail

Summary

• ID
  rs45687212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20209730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAACG GTTTTGCCAA
  ATATTTAGAA TCTTACCACT GGTTTTAATC AGGTAGTTAA GACCCTTTTA CCAAGTCAAG
  GGCATAGGAA TCCCATAATG CCATATACTT GTAGGTAGGA GAAACTCAGG CTCAGAAAGT
  TAAGTTACTT TGCTATGATA ATAAGCCTTA AGAGGAGAGG TTTGTTTCAG ATCAACACAC
  Y
  CCCATAGAAA GCCCCAGTGC CTTTAGCATA CTGGTTCTGG ATAAAGGGTA GTAAGTTCCC
  GTAATTCTGC TTAGGTAATT CAGTTGTTTC GGTTCATCTA TTTCACAAAT CTTGAAGGCC
  AATTTGTCAT TTCAGGGGGG AAGTTGAGAA ATACTTTTCT AATGTAGCCT GCACCTTGCA
  AACACAATTC TCCCTCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671653	ENSMUSSNP6019625	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45687212					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20209730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	293 bp distal
Gyg1	glycogenin 1	502 bp upstream
Rr574068	regulatory region 574068	960 bp distal
Rr574069	regulatory region 574069	within coordinates
Rr574070	regulatory region 574070	302 bp distal
Tssr841	transcription start site region 841	494 bp upstream
Tssr32710	transcription start site region 32710	444 bp upstream