rs45688090 SNP Detail

Summary

• ID
  rs45688090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112497972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCAAAGT CAGAAGAGCC
  CCATTAACCC CAATGCTGCC TTGTTATAGT GGCATATCCC CCCATCCTAA GCCCTGGCAA
  CCATAGATTA GTTCTCTCTA TAGTTTCTTC CTTCTGAAAT GTCATATACA TGTGACTGTA
  GGTTGACTGT CCCTTAGCCG CCATGTTGTG ATGGGAAGTA TTTCAGATTT CTGAATTGTT
  K
  CGATTTGGGA AGACTTTCCT AAATATCATG AGACATCTTA AAATGAAACC AATTGTAAAC
  ACAAAATGTG TTTAAGCACA TAGCCTGAAG GGAATTCTAC ACAGCATCTT AAGCGCACTT
  AAACTTCAGC TCTGACTTGT CATACAGGGT CAGATATTGA ATTTTTCCCT TGTGACATCC
  AACACGTCAA TGTTCAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696543	NES15531965	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45688090					SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696543	NES15531965	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112497972 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm48837	predicted gene, 48837	within coordinates
Tssr121108	transcription start site region 121108	1979 bp upstream