rs45688797 SNP Detail

Summary

• ID
  rs45688797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79890558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGGGCGGT GTGCATGGCT GGTCTGAAAA TGGGGATTTC
  CTGACTGGCT TCATTCCCAC TCTTTCTCTC TCCCAGGGGT TTCGTGTGCA TCGTCACCAA
  Y
  GTGGCCTCGC AATGAGGCAA AACTGACGTA AACTACACTC AGCTAGTCGA TCTGCATGCC
  CGATATGCTG AGTGTGGTTT ACGAATCCTG GCCTTCCCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61291518	NES16900869	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45688797					SNP	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291518	NES16900869	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79890558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	within coordinates
Gm65896	predicted gene, 65896	744 bp upstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	1738 bp downstream
Rr402035	regulatory region 402035	1120 bp downstream
Rr435057	regulatory region 435057	1226 bp distal
Rr435058	regulatory region 435058	249 bp distal
Rr435059	regulatory region 435059	518 bp distal
Rr435060	regulatory region 435060	287 bp distal
Rr435061	regulatory region 435061	1187 bp proximal
Tssr94472	transcription start site region 94472	1534 bp downstream
Tssr94473	transcription start site region 94473	1154 bp downstream
Tssr94474	transcription start site region 94474	1059 bp downstream
Tssr94475	transcription start site region 94475	740 bp downstream
Tssr94476	transcription start site region 94476	698 bp downstream
Tssr94477	transcription start site region 94477	681 bp downstream
Tssr94478	transcription start site region 94478	671 bp downstream
Tssr98381	transcription start site region 98381	1310 bp upstream