rs45689089 SNP Detail

Summary

• ID
  rs45689089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71962431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttcctctc acaccctctc tatttccctc
  cttctatctc ttcacccctt ccttctatcc tctctctgcc tctactctct ctatccctcC
  TTTCTCTACA ACAATACCCT TCCCTAGCTA TATAAAACTG AATTATTGTA TATTCTTTAG
  Y
  CTTTCCCTAC AGGTTCCATA TTAATTCATT CAGATGTATA CATTTGCTGT GTCTTGGTTT
  GGGTTCAGCG TTTTGTAACT ATCCCATGCC TGCTTAGACA GAACCATAGA CCCGTCACCC
  TTGAATTCTT GAGTGGAATG CTTATTGTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144647959	ENSMUSSNP2317893	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319787555	CHEV_1_71969846	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45689089					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71962431 () rs orientation: forward

Symbol	Name	Function Class
Gm70455	predicted gene, 70455	1302 bp downstream