rs45689873 SNP Detail

Summary

• ID
  rs45689873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172189006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTGACA GGTGTGTTTA
  CAGCAAGGAT AAGTCTGGTC TCAGGCTCAT AGGATCCATG TCTCTGCTTG CTAAGTCAAT
  CACTTTGATC AAACGCTATC CCTTTTCCAT GTCTGTAAAA TGAGATGTTA CTAAGTCATT
  TCCCAGAGGG TGAATGTGAT AGGCGACAGC ATGCTAGCTG GCATCTGGTA CATCATGGCT
  R
  ACACCAGTGA TTTCTGTCAT CCGTGTCACA CCGCCCAGGG CCTCCAGAGC CCAGGAGCTG
  AGCTTGTACT TCAAAAAGGA TACTCCTCAA GAAGCCAACT GTGGGGGAGG GACCTGCCCT
  GGGACTCAGT CCGGCATTCC CACTCCACCT CCAACCTGCC TGCCTTCACT GGGAGGCCAG
  CTGGGGTCTC CAAATGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148314057	ENSMUSSNP299788	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45689873					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172189006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	703 bp distal
Fam210b	family with sequence similarity 210, member B	within coordinates
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	1496 bp downstream
Tssr21945	transcription start site region 21945	1460 bp downstream
Tssr21946	transcription start site region 21946	1439 bp downstream
Tssr27939	transcription start site region 27939	1403 bp upstream