rs45690948 SNP Detail

Summary

• ID
  rs45690948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:74828105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCCAT CATCTTCTGT
  GTGGAGCTCA GTGGCTATGA CCTGAAGCTC TATGAGGACA ACCAGACGGT GAGTAGAGCC
  TAGGTTTCTA CTGTTGGTTC CCAGGAAGCA GGTGGACTTG TAGGAGCAGA GAGAGACTTT
  GGTCCAGGGC TGTTACTGAG CCTTGCCCAG CCACGTGGAC GGCGCTGTGA GTGGTTCCAT
  R
  AGATGGGATG AGCACACCCC ATGTTTTATG TTGGGGGGTT GCAGGGGGGA ATGTGGTGTG
  GAACATGGTG AGTTCATGCA TGACACGGGA CTTCAGGGGC ATTCTCGTCG AGTTATGAGC
  CCCAGTGGAC AGGGTCATGA TGGTATCCCA TAAGACCTCA ACTTTCTACG ACTCCTTCAG
  CCTGAGGGAC ATCACTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52365632	NES15274955	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45690948					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52365632	NES15274955	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:74828105 () rs orientation: forward

Symbol	Name	Function Class
Gnaz	guanine nucleotide binding protein, alpha z subunit	within coordinates
Rr216253	regulatory region 216253	296 bp proximal
Rr224993	regulatory region 224993	904 bp distal
Rsph14	radial spoke head homolog 14 (Chlamydomonas)	within coordinates