rs45691190 SNP Detail

Summary

• ID
  rs45691190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGACTTCA ATACCAAATT
  GCAGGGGGAA GAAAGAGATT TCCCATGAAG GGATGCTAAG GCGCTCCTGG GCTTATAACC
  CCAGCACTCA GGAACCCTAG GAAGGAGGGC TGTAAGCCTA ATGCCAACCT GTGAAGTTTA
  TTGAGATCCT CACTCAGAAA ACAAAACTTA GGGCCAGCAA GATAGCTCAT GCACAAAAGG
  W
  CACACACGCG CGCGCGCGTG CGCGCAAATG TAAAAAGTAT CCCACTCAAC CCACGATCCC
  AAAATGGGAA AACAAAACAA AATGAAAACA AAACAAAACA AAACAAAATA AAAAACCAAA
  AACCCGTGAT TAACATCTGG AAGTGGTAGC CCATAGCAGT AATCTCAGCA CTTGAGAAGG
  TAAGACTGAA GACCACATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135531	ENSMUSSNP3331551	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45691190					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111610 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm10252	predicted gene 10252	1886 bp downstream
Gm73429	predicted gene, 73429	723 bp upstream
Gm73431	predicted gene, 73431	536 bp downstream
Rr380754	regulatory region 380754	754 bp downstream
Rr646450	regulatory region 646450	1812 bp distal
Rr646452	regulatory region 646452	1167 bp distal
Rr646453	regulatory region 646453	734 bp distal
Rr646454	regulatory region 646454	237 bp distal
Rr646455	regulatory region 646455	853 bp proximal
Tssr66542	transcription start site region 66542	1086 bp downstream
Tssr72399	transcription start site region 72399	1240 bp upstream
Tssr72400	transcription start site region 72400	1209 bp upstream