rs45695060 SNP Detail

Summary

• ID
  rs45695060
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC GTTCTATTAC CTTCTAGTGC
  G
  CTTTCTTACT GCTGATCTTC TTCAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134809936	ENSMUSSNP1526798	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320711436	CHEV_3_37537731	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45695060					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	872 bp proximal
Gm42922	predicted gene 42922	1296 bp downstream
Rr575523	regulatory region 575523	648 bp proximal
Rr575524	regulatory region 575524	1282 bp proximal
Rr575525	regulatory region 575525	1967 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1138 bp upstream
Tssr28908	transcription start site region 28908	855 bp upstream
Tssr28909	transcription start site region 28909	1096 bp upstream
Tssr28910	transcription start site region 28910	1119 bp upstream
Tssr28911	transcription start site region 28911	1136 bp upstream
Tssr28912	transcription start site region 28912	1176 bp upstream