rs45695722 SNP Detail

Summary

• ID
  rs45695722
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126931974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCTAGA ACTTCTAATG
  TAGATCAGGC TGGCCCTGAG CTCATAGAAA TCTTCCTGCC TCTGATTCCA GAGTGCTGAC
  TTTAAAGACA TGTACCACCA CACCCATGTT TTTTATTTTA TTTTATTTTA TTTTATTATT
  TTTGTGGGCT GGAAAGTTGA CTCAGTGGTT GAGAGTAATT GCTGTTCTCA CAAAGGATGA
  M
  AGTTTGATTC CCAGCCCCCA CTTGGAGGCT CACCACCTCC TTACACACCA GGCATGCATT
  TGGTGCACAG ATATGCATGC ACACAATAAT AAAAATAAAT CTAAAATTTA AACCTTTTGT
  TATTGGTGGG GAGTGGGGGG GGGGCTACCA TAGTGCACAG GTGGGGGTCA GGGGACAACT
  TTGAAGGGTC TGTTCTCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145879502	ENSMUSSNP5796671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss322451434	CHEV_7_134476316	CHEVERUD	SCREENING_POP	f	SNP			C		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs45695722					SNP	C	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126931974 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	440 bp downstream
Tssr69201	transcription start site region 69201	768 bp upstream
Tssr69202	transcription start site region 69202	800 bp upstream
Tssr69203	transcription start site region 69203	848 bp upstream
Tssr69204	transcription start site region 69204	979 bp upstream
Tssr69205	transcription start site region 69205	1911 bp upstream