rs45696711 SNP Detail

Summary

• ID
  rs45696711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45576459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATCTCA CTGTCATTAA
  TTACATACTT TTCAAGTAGC TTGGGGTTCA GCAGGATTTG GGTCCTTCAT ATATGATACC
  AAGTTAGGTG GCATCTTTCC CAGGCTATCA CGACTGCTTT GTGACGATTA CTTCTACTGA
  ATGAGACCCC CACACTCATC CCATGAATCT GTGAAATGAC TCATTATGTT TCTTCTAAAA
  W
  TACAAAGAGA AGAAAGCCTA GCATCACCCC CGGAACACAA TAGTTCTTTA TAAACTGTAG
  TTATGCGCAT AGTGAATGCT TACACCCTTA AAATAGTTAC CTTATTTCTA ATTATATGTC
  TATCTGTGTG ATGGGGTGGA GGGTGATGAC ATGAGTACAG GTGCTCAGAG GTCAGAGAGG
  TCAGAGATCT CTCTGGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148351322	ENSMUSSNP1608131	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45696711					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45576459 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	967 bp upstream
Rr611049	regulatory region 611049	622 bp proximal
Rr611050	regulatory region 611050	846 bp proximal
Rr611051	regulatory region 611051	1122 bp proximal
Rr611052	regulatory region 611052	1211 bp proximal