rs45699475 SNP Detail

Summary

• ID
  rs45699475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41580228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAATTTCT TTCTTCTTTC
  CTATTCATTT TCTATATTAC TTAAAACACA GTTCACAGAA ATGATAATGT AATGCAGTTA
  AGTTTGACCA ATACATAAAC GTTAAAGCCC ACTAGCATTT TCACATTAGA AATTAACAAA
  TTCAGAGGCC AGAAGGACAC ACTTGATAGC TTATCCTTCC CTCGGAGAAT ACTAGGAGTA
  Y
  TCAGGAAGAG ATAACTGGAG AGGTTCTTCT TAGATGCAAA GGGGTTCTTC TCATGTAACA
  AATGGGGCCA TTCTGTGTGA TCCTGTTCTT AAAAACTTAG TTTATGGACA GTTATTCCTG
  ACCCTCAACA TGCCAGGAAC TTAGTTGAAG GAGAGGAAAT GTTATTTTGT ATCAAGGATC
  TGCCAAGAGT TAAAAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ
ss60397263	NES15898196	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ
rs45699475					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397263	NES15898196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41580228 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	927 bp downstream