rs45701321 SNP Detail

Summary

• ID
  rs45701321
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20810481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC TTTGTTCCCC AGGCTTGCCC
  S
  TGAACTCCTA AACGCAAGGA ATTCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136224738	ENSMUSSNP3514789	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss322873593	CHEV_9_20703629	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45701321					SNP	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20810481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	408 bp distal
Eif3g	eukaryotic translation initiation factor 3, subunit G	595 bp upstream
Rr674623	regulatory region 674623	72 bp distal
Rr674624	regulatory region 674624	489 bp distal
Rr674625	regulatory region 674625	933 bp proximal
Tssr2789	transcription start site region 2789	610 bp upstream
Tssr2790	transcription start site region 2790	599 bp upstream
Tssr83934	transcription start site region 83934	1270 bp downstream
Tssr88340	transcription start site region 88340	554 bp upstream