rs45701955 SNP Detail

Summary

• ID
  rs45701955
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127346589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCTCAA TATCCTGCCA
  GTTGAGTTAG GCCCTGACCA GTCCCAAGAG AGGGCAGGAG GTATGACAGG GACACTGTTT
  GTCCCCAGTG CCTCCCACTC CCACAAGCCA GCTGCCTGGT GATGGATGAT GCTGCCACAC
  TCTGCAAAGG TCATAAGTCT AGGCCAAGGA GCAGACTGAA TTGAAAATAG ATCAGAGGAA
  S
  GGTATTACAG GGTCCAGGCC ACGGTGAACA CTCCCCTCCT CCAGGTTCTT ATTGCTGTTA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA TCTCCTTCTT AGATGAATGG GCAGCATGCC
  TGAGAAGGTG AGGGACAGAC TGACTGACCC TGCCTTCAAC CTTCACCTCA CCTCAGCTGG
  GACTCCTGGG GACCTCTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334358	NES16949422	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45701955					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334358	NES16949422	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127346589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2360	CpG island 2360	1124 bp distal
Cpgi2361	CpG island 2361	821 bp proximal
Cpgi2362	CpG island 2362	1977 bp proximal
Rr402329	regulatory region 402329	1389 bp downstream
Rr440928	regulatory region 440928	1571 bp distal
Rr440929	regulatory region 440929	959 bp distal
Rr440930	regulatory region 440930	1206 bp proximal
Rr440931	regulatory region 440931	1369 bp proximal
Rr440932	regulatory region 440932	1564 bp proximal
Stac3	SH3 and cysteine rich domain 3	1897 bp downstream