rs45702838 SNP Detail

Summary

• ID
  rs45702838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171286543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAT ATAAAGGTAC TCTAGGCCTG
  R
  CTGGGTGTGT GGCTGGGTAG TAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss119999076	PARCsnp_1.13615	PARC_SEQ	INBRED	f	SNP		G	A
ss120001187	PARCsnp_1.02862	PARC_SEQ	INBRED	f	SNP		G	A
ss146163824	ENSMUSSNP1781207	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320119041	CHEV_1_173389106	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs45702838					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171286543 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	1027 bp distal
Rr31965	regulatory region 31965	659 bp proximal
Tssr10057	transcription start site region 10057	856 bp downstream
Tssr10058	transcription start site region 10058	616 bp downstream