rs45703719 SNP Detail

Summary

• ID
  rs45703719
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69540693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTGTTTTGAA ACATAGTTTC
  W
  CTATGTAGCT CTGGCTGCCC TGGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145091523	ENSMUSSNP3781711	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss322693713	CHEV_8_71611940	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45703719					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69540693 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	695 bp upstream
Cpgi20406	CpG island 20406	462 bp proximal
Rr400869	regulatory region 400869	445 bp upstream
Rr664484	regulatory region 664484	115 bp proximal
Rr664485	regulatory region 664485	1171 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	675 bp upstream
Tssr77657	transcription start site region 77657	692 bp upstream
Tssr77658	transcription start site region 77658	712 bp upstream
Tssr81518	transcription start site region 81518	1159 bp downstream