rs45704322 SNP Detail

Summary

• ID
  rs45704322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGA CAATCACGGG GTACCACCAT
  Y
  GGAGGGATTC CTGCAAGTCC TATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60987114	NES16140799	PERLEGEN	MM_PANEL2	f	SNP		C	C			T	C	T	T
ss148642693	ENSMUSSNP874294	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss322127374	CHEV_7_29938795	CHEVERUD	SCREENING_POP	f	SNP					T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs45704322					SNP	T	?	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987114	NES16140799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853201 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1904 bp upstream
Cpgi18740	CpG island 18740	1523 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Rasgrp4	RAS guanyl releasing protein 4	within coordinates
Rr644490	regulatory region 644490	431 bp proximal
Rr644491	regulatory region 644491	1414 bp proximal
Rr644492	regulatory region 644492	1926 bp proximal
Tssr65599	transcription start site region 65599	1867 bp upstream
Tssr65600	transcription start site region 65600	1895 bp upstream
Tssr65601	transcription start site region 65601	1968 bp upstream
Tssr71610	transcription start site region 71610	1821 bp downstream
Tssr71611	transcription start site region 71611	1846 bp downstream
Tssr71612	transcription start site region 71612	1941 bp downstream